Rory Stark — accepted AI-conference papers

2025

PerturBench: Benchmarking Machine Learning Models for Cellular Perturbation Analysis

Yan Wu, Esther Wershof, Sebastian M Schmon, Marcel Nassar, Błażej Osiński, Ridvan Eksi +4

NeurIPS 2025poster

We introduce a comprehensive framework for modeling single cell transcriptomic responses to perturbations, aimed at standardizing benchmarking in this rapidly evolving field. Our approach includes a modular and user-friendly model development and evaluation platform, a collection of diverse perturba…

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2025

scGeneScope: A Treatment-Matched Single Cell Imaging and Transcriptomics Dataset and Benchmark for Treatment Response Modeling

Joel Dapello, Marcel Nassar, Ridvan Eksi, Ban Wang, Jules Gagnon-Marchand, Kenneth T Gao +18

NeurIPS 2025poster

Understanding cellular responses to chemical interventions is critical to the discovery of effective therapeutics. Because individual biological techniques often measure only one axis of cellular response at a time, high-quality multimodal datasets are needed to unlock a holistic understanding of ho…

Cited by 0 Source ↗Scholar ↗