EEGNN: Edge Enhanced Graph Neural Network with a Bayesian Nonparametric Graph Model
Yirui Liu, Xinghao Qiao, Liying Wang, Jessica Lam
Abstract
Training deep graph neural networks (GNNs) poses a challenging task, as the performance of GNNs may suffer from the number of hidden message-passing layers. The literature has focused on the proposals of over-smoothing and under-reaching to explain the performance deterioration of deep GNNs. In this paper, we propose a new explanation for such deteriorated performance phenomenon, mis-simplification, that is, mistakenly simplifying graphs by preventing self-loops and forcing edges to be unweighted. We show that such simplifying can reduce the potential of message-passing layers to capture the structural information of graphs. In view of this, we propose a new framework, edge enhanced graph neural network (EEGNN). EEGNN uses the structural information extracted from the proposed Dirichlet mixture Poisson graph model (DMPGM), a Bayesian nonparametric model for graphs, to improve the performance of various deep message-passing GNNs. We propose a Markov chain Monte Carlo inference framework for DMPGM. Experiments over different datasets show that our method achieves considerable performance increase compared to baselines.
BibTeX
@InProceedings{pmlr-v206-liu23a,
title = {EEGNN: Edge Enhanced Graph Neural Network with a Bayesian Nonparametric Graph Model},
author = {Liu, Yirui and Qiao, Xinghao and Wang, Liying and Lam, Jessica},
booktitle = {Proceedings of The 26th International Conference on Artificial Intelligence and Statistics},
pages = {2132--2146},
year = {2023},
editor = {Ruiz, Francisco and Dy, Jennifer and van de Meent, Jan-Willem},
volume = {206},
series = {Proceedings of Machine Learning Research},
month = {25--27 Apr},
publisher = {PMLR},
pdf = {https://proceedings.mlr.press/v206/liu23a/liu23a.pdf},
url = {https://proceedings.mlr.press/v206/liu23a.html},
abstract = {Training deep graph neural networks (GNNs) poses a challenging task, as the performance of GNNs may suffer from the number of hidden message-passing layers. The literature has focused on the proposals of over-smoothing and under-reaching to explain the performance deterioration of deep GNNs. In this paper, we propose a new explanation for such deteriorated performance phenomenon, mis-simplification, that is, mistakenly simplifying graphs by preventing self-loops and forcing edges to be unweighted. We show that such simplifying can reduce the potential of message-passing layers to capture the structural information of graphs. In view of this, we propose a new framework, edge enhanced graph neural network (EEGNN). EEGNN uses the structural information extracted from the proposed Dirichlet mixture Poisson graph model (DMPGM), a Bayesian nonparametric model for graphs, to improve the performance of various deep message-passing GNNs. We propose a Markov chain Monte Carlo inference framework for DMPGM. Experiments over different datasets show that our method achieves considerable performance increase compared to baselines.}
}