QA-based Event Start-Points Ordering for Clinical Temporal Relation Annotation

Abstract

Temporal relation annotation in the clinical domain is crucial yet challenging due to its workload and the medical expertise required. In this paper, we propose a novel annotation method that integrates event start-points ordering and question-answering (QA) as the annotation format. By focusing only on two points on a timeline, start-points ordering reduces ambiguity and simplifies the relation set to be considered during annotation. QA as annotation recasts temporal relation annotation into a reading comprehension task, allowing annotators to use natural language instead of the formalisms commonly adopted in temporal relation annotation. Based on our method, most of the relations in a document are inferable from a significantly smaller number of explicitly annotated relations, showing the efficiency of our proposed method. Using these inferred relations, we develop a temporal relation classification model that achieves a 0.72 F1 score. Also, by decomposing the annotation process into QA generation and QA validation, our method enables collaboration among medical experts and non-experts. We obtained high inter-annotator agreement (IAA) scores, which indicate the positive prospect of such collaboration in the annotation process. Our annotated corpus, annotation tool, and trained model are publicly available: https://github.com/seiji-shimizu/qa-start-ordering.