HiMAE: Hierarchical Masked Autoencoders Discover Resolution-Specific Structure in Wearable Time Series

Abstract

Wearable sensors provide abundant physiological time series observations, yet the resolution at which we should extract features for downstream tasks remain unclear. We hypothesize that temporal resolution is a fundamental axis of representation learning, with different clinical and behavioral outcomes relying on features at distinct scales. To test this resolution hypothesis, we introduce HiMAE (Hierarchical Masked Autoencoder), a self-supervised framework that combines masked autoencoding with a hierarchical convolutional encoder–decoder. HiMAE produces multi-resolution embeddings across its intermediate layers that enable systematic evaluation of which temporal scales carry predictive signal, transforming resolution from a hyperparameter into a probe for interpretability. Across classification and generative benchmarks, HiMAE consistently outperforms state-of-the-art foundation models that collapse scale, while being orders of magnitude smaller. Due to the convolution based design choices behind HiMAE, the model is also compact enough to run entirely on-device, achieving sub-millisecond inference on smartwatch-class CPUs for true edge inference. Together, these contributions position HiMAE as both an efficient self supervised learning method and a discovery tool for understanding how time resolution contributes to downstream task alignment.