Large-Scale Sparse Inverse Covariance Estimation via Thresholding and Max-Det Matrix Completion
Richard Zhang, Salar Fattahi, Somayeh Sojoudi
Abstract
The sparse inverse covariance estimation problem is commonly solved using an $\ell_{1}$-regularized Gaussian maximum likelihood estimator known as “graphical lasso”, but its computational cost becomes prohibitive for large data sets. A recently line of results showed{–}under mild assumptions{–}that the graphical lasso estimator can be retrieved by soft-thresholding the sample covariance matrix and solving a maximum determinant matrix completion (MDMC) problem. This paper proves an extension of this result, and describes a Newton-CG algorithm to efficiently solve the MDMC problem. Assuming that the thresholded sample covariance matrix is sparse with a sparse Cholesky factorization, we prove that the algorithm converges to an $\epsilon$-accurate solution in $O(n\log(1/\epsilon))$ time and $O(n)$ memory. The algorithm is highly efficient in practice: we solve the associated MDMC problems with as many as 200,000 variables to 7-9 digits of accuracy in less than an hour on a standard laptop computer running MATLAB.
BibTeX
@InProceedings{pmlr-v80-zhang18c,
title = {Large-Scale Sparse Inverse Covariance Estimation via Thresholding and Max-Det Matrix Completion},
author = {Zhang, Richard and Fattahi, Salar and Sojoudi, Somayeh},
booktitle = {Proceedings of the 35th International Conference on Machine Learning},
pages = {5766--5775},
year = {2018},
editor = {Dy, Jennifer and Krause, Andreas},
volume = {80},
series = {Proceedings of Machine Learning Research},
month = {10--15 Jul},
publisher = {PMLR},
pdf = {http://proceedings.mlr.press/v80/zhang18c/zhang18c.pdf},
url = {https://proceedings.mlr.press/v80/zhang18c.html},
abstract = {The sparse inverse covariance estimation problem is commonly solved using an $\ell_{1}$-regularized Gaussian maximum likelihood estimator known as “graphical lasso”, but its computational cost becomes prohibitive for large data sets. A recently line of results showed{–}under mild assumptions{–}that the graphical lasso estimator can be retrieved by soft-thresholding the sample covariance matrix and solving a maximum determinant matrix completion (MDMC) problem. This paper proves an extension of this result, and describes a Newton-CG algorithm to efficiently solve the MDMC problem. Assuming that the thresholded sample covariance matrix is sparse with a sparse Cholesky factorization, we prove that the algorithm converges to an $\epsilon$-accurate solution in $O(n\log(1/\epsilon))$ time and $O(n)$ memory. The algorithm is highly efficient in practice: we solve the associated MDMC problems with as many as 200,000 variables to 7-9 digits of accuracy in less than an hour on a standard laptop computer running MATLAB.}
}