Noisy Ostracods: A Fine-Grained, Imbalanced Real-World Dataset for Benchmarking Robust Machine Learning and Label Correction Methods

Abstract

We present the Noisy Ostracods, a noisy dataset for genus and species classification of crustacean ostracods with specialists’ annotations. Over the 71466 specimens collected, 5.58% of them are estimated to be noisy (possibly problematic) at genus level. The dataset is created to addressing a real-world challenge: creating a clean fine-grained taxonomy dataset. The Noisy Ostracods dataset has diverse noises from multiple sources. Firstly, the noise is open-set, including new classes discovered during curation that were not part of the original annotation. The dataset has pseudo-classes, where annotators misclassified samples that should belong to an existing class into a new pseudo-class. The Noisy Ostracods dataset is highly imbalanced with a imbalance factor ρ = 22429. This presents a unique challenge for robust machine learning methods, as existing approaches have not been extensively evaluated on fine-grained classification tasks with such diverse real-world noise. Initial experiments using current robust learning techniques have not yielded significant performance improvements on the Noisy Ostracods dataset compared to cross-entropy training on the raw, noisy data. On the other hand, noise detection methods have underperformed in error hit rate compared to naive cross-validation ensembling for identifying problematic labels. These findings suggest that the fine-grained, imbalanced nature, and complex noise characteristics of the dataset present considerable challenges for existing noiserobust algorithms. By openly releasing the Noisy Ostracods dataset, our goal is to encourage further research into the development of noise-resilient machine learning methods capable of effectively handling diverse, real-world noise in finegrained classification tasks. The dataset, along with its evaluation protocols, can be accessed at https://github.com/H-Jamieu/Noisy_ostracods.