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Alex Hawkins-Hooker

2 accepted papers

2025

PertEval-scFM: Benchmarking Single-Cell Foundation Models for Perturbation Effect Prediction

ICML 2025poster

*In silico* modeling of transcriptional responses to perturbations is crucial for advancing our understanding of cellular processes and disease mechanisms. We present PertEval-scFM, a standardized framework designed to evaluate models for perturbation effect prediction. We apply PertEval-scFM to ben…

2023

Moment Matching Denoising Gibbs Sampling

NeurIPS 2023poster

Energy-Based Models (EBMs) offer a versatile framework for modelling complex data distributions. However, training and sampling from EBMs continue to pose significant challenges. The widely-used Denoising Score Matching (DSM) method for scalable EBM training suffers from inconsistency issues, causin…