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Alex Morehead

3 accepted papers

2025

gRNAde: Geometric Deep Learning for 3D RNA inverse design

ICLR 2025spotlight

Computational RNA design tasks are often posed as inverse problems, where sequences are designed based on adopting a single desired secondary structure without considering 3D conformational diversity. We introduce gRNAde, a geometric RNA design pipeline operating on 3D RNA backbones to design sequen…

2024

Evaluating Representation Learning on the Protein Structure Universe

ICLR 2024poster

We introduce ProteinWorkshop, a comprehensive benchmark suite for representation learning on protein structures with Geometric Graph Neural Networks. We consider large-scale pre-training and downstream tasks on both experimental and predicted structures to enable the systematic evaluation of the qua…