Alireza Karbalayghareh — accepted AI-conference papers

2018

Bayesian multi-domain learning for cancer subtype discovery from next-generation sequencing count data

Ehsan Hajiramezanali, Siamak Zamani Dadaneh, Alireza Karbalayghareh, Mingyuan Zhou, Xiaoning Qian

NeurIPS 2018poster

Precision medicine aims for personalized prognosis and therapeutics by utilizing recent genome-scale high-throughput profiling techniques, including next-generation sequencing (NGS). However, translating NGS data faces several challenges. First, NGS count data are often overdispersed, requiring appr…

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2017

Classification of Gaussian trajectories with missing data in Boolean gene regulatory networks

Alireza Karbalayghareh, Ulisses M. Braga-Neto, Edward R. Dougherty

ICASSP 2017accepted

This paper studies the classification of gene regulatory networks (GRNs) modeled by probabilistic Boolean networks (PBNs). After observing Gaussian expression values of n genes at m consecutive time points, with consideration of missing data, an algorithm based on expectation maximization (EM) is pr…

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