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Alma Andersson

3 accepted papers

2026

HiST: A Hierarchical Sparse Transformer for Cross-Modal Spatial Transcriptomics Modeling

ICML 2026poster

Spatial transcriptomics (ST) links gene expression with tissue morphology but remains expensive and low-throughput, motivating surrogates that infer expression from routine histology. Whole-slide H&E-to-ST inference pairs a gigapixel image with gene measurements at a sparse, irregular set of locatio…

Cited by 0SourceScholar
2026

Knowledgeable Language Models as Black-Box Optimizers for Personalized Medicine

ICLR 2026poster

The goal of personalized medicine is to discover a treatment regimen that optimizes a patient's clinical outcome based on their personal genetic and environmental factors. However, candidate treatments cannot be arbitrarily administered to the patient to assess their efficacy; we often instead have…

Cited by 0SourceScholar
2026

scCBGM: Single-Cell Editing via Concept Bottlenecks

ICML 2026poster

Understanding cellular phenotypes and how they respond to perturbations is critical for disease biology and therapeutic design. Single-cell RNA sequencing enables characterization at cellular resolution, yet the combinatorial space of conditions makes exhaustive experimental mapping infeasible. We i…

Cited by 0SourceScholar