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Amaya Gallagher-Syed

2 accepted papers

2025

BioX-CPath: Biologically-driven Explainable Diagnostics for Multistain IHC Computational Pathology

CVPR 2025poster

The development of biologically interpretable and explainable models remains a key challenge in computational pathology, particularly for multistain immunohistochemistry (IHC) analysis. We present BioX-CPath, an explainable graph neural network architecture for whole slide image (WSI) classification…

2025

PertEval-scFM: Benchmarking Single-Cell Foundation Models for Perturbation Effect Prediction

ICML 2025poster

*In silico* modeling of transcriptional responses to perturbations is crucial for advancing our understanding of cellular processes and disease mechanisms. We present PertEval-scFM, a standardized framework designed to evaluate models for perturbation effect prediction. We apply PertEval-scFM to ben…