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Andrew Shen

4 accepted papers

2025

Evolutionary Reasoning Does Not Arise in Standard Usage of Protein Language Models

NeurIPS 2025poster

Protein language models (PLMs) are often assumed to capture evolutionary information by training on large protein sequence datasets. Yet it remains unclear whether PLMs can reason about evolution—that is, infer evolutionary relationships between sequences. We test this capability by evaluating wheth…

Cited by 0SourceScholar
2023

Characterizing Out-of-Distribution Error via Optimal Transport

NeurIPS 2023poster

Out-of-distribution (OOD) data poses serious challenges in deployed machine learning models, so methods of predicting a model's performance on OOD data without labels are important for machine learning safety. While a number of methods have been proposed by prior work, they often underestimate the a…

Cited by 20SourcePDFScholar
2022

Conservative and Adaptive Penalty for Model-Based Safe Reinforcement Learning

AAAI 2022technical

Reinforcement Learning (RL) agents in the real world must satisfy safety constraints in addition to maximizing a reward objective. Model-based RL algorithms hold promise for reducing unsafe real-world actions: they may synthesize policies that obey all constraints using simulated samples from a lear…

2022

Versatile Offline Imitation from Observations and Examples via Regularized State-Occupancy Matching

ICML 2022spotlight

We propose State Matching Offline DIstribution Correction Estimation (SMODICE), a novel and versatile regression-based offline imitation learning algorithm derived via state-occupancy matching. We show that the SMODICE objective admits a simple optimization procedure through an application of Fenche…