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Carlos Oliver

2 accepted papers

2023

ProteinShake: Building datasets and benchmarks for deep learning on protein structures

NeurIPS 2023poster

We present ProteinShake, a Python software package that simplifies dataset creation and model evaluation for deep learning on protein structures. Users can create custom datasets or load an extensive set of pre-processed datasets from biological data repositories such as the Protein Data Bank (PDB)…

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2023

Unsupervised Manifold Alignment with Joint Multidimensional Scaling

ICLR 2023poster

We introduce Joint Multidimensional Scaling, a novel approach for unsupervised manifold alignment, which maps datasets from two different domains, without any known correspondences between data instances across the datasets, to a common low-dimensional Euclidean space. Our approach integrates Multid…