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Gyubok Lee

10 accepted papers

2026

From Conversation to Query Execution: Benchmarking User and Tool Interactions for EHR Database Agents

ICLR 2026poster

Despite the impressive performance of LLM-powered agents, their adoption for Electronic Health Record (EHR) data access remains limited by the absence of benchmarks that adequately capture real-world clinical data access flows. In practice, two core challenges hinder deployment: query ambiguity from…

Cited by 0SourcecodeScholar
2024

EHR-SeqSQL : A Sequential Text-to-SQL Dataset For Interactively Exploring Electronic Health Records

ACL 2024findings

In this paper, we introduce EHR-SeqSQL, a novel sequential text-to-SQL dataset for Electronic Health Record (EHR) databases. EHR-SeqSQL is designed to address critical yet underexplored aspects in text-to-SQL parsing: interactivity, compositionality, and efficiency. To the best of our knowledge, EHR…

2024

EHRCon: Dataset for Checking Consistency between Unstructured Notes and Structured Tables in Electronic Health Records

NeurIPS 2024spotlight

Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for straightforward data retrieval and provide deep, contextual insights i…

2024

Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes

ACL 2024findings

The development of large language models tailored for handling patients’ clinical notes is often hindered by the limited accessibility and usability of these notes due to strict privacy regulations.To address these challenges, we first create synthetic large-scale clinical notes using publicly avail…

2023

ECG-QA: A Comprehensive Question Answering Dataset Combined With Electrocardiogram

NeurIPS 2023poster

Question answering (QA) in the field of healthcare has received much attention due to significant advancements in natural language processing. However, existing healthcare QA datasets primarily focus on medical images, clinical notes, or structured electronic health record tables. This leaves the va…

2023

EHRXQA: A Multi-Modal Question Answering Dataset for Electronic Health Records with Chest X-ray Images

NeurIPS 2023poster

Electronic Health Records (EHRs), which contain patients' medical histories in various multi-modal formats, often overlook the potential for joint reasoning across imaging and table modalities underexplored in current EHR Question Answering (QA) systems. In this paper, we introduce EHRXQA, a novel m…

2023

Exploration Into Translation-Equivariant Image Quantization

ICASSP 2023accepted

This is an exploratory study that discovers the current image quantization (vector quantization) do not satisfy translation equivariance in the quantized space due to aliasing. Instead of focusing on anti-aliasing, we propose a simple yet effective way to achieve translation-equivariant image quanti…

Cited by 0SourceScholar
2022

EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records

NeurIPS 2022accept

We present a new text-to-SQL dataset for electronic health records (EHRs). The utterances were collected from 222 hospital staff, including physicians, nurses, insurance review and health records teams, and more. To construct the QA dataset on structured EHR data, we conducted a poll at a university…

2021

Improving Lexically Constrained Neural Machine Translation with Source-Conditioned Masked Span Prediction

ACL 2021short

Accurate terminology translation is crucial for ensuring the practicality and reliability of neural machine translation (NMT) systems. To address this, lexically constrained NMT explores various methods to ensure pre-specified words and phrases appear in the translation output. However, in many case…

2020

Diverse and Admissible Trajectory Prediction through Multimodal Context Understanding

ECCV 2020poster

Multi-agent trajectory forecasting in autonomous driving requires an agent to accurately anticipate the behaviors of the surrounding vehicles and pedestrians, for safe and reliable decision-making. Due to partial observability in these dynamical scenes, directly obtaining the posterior distribution…