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Jiao Yuan

3 accepted papers

2026

Investigating Data Pruning for Pretraining Biological Foundation Models at Scale

AAAI 2026technical

Biological foundation models (BioFMs), pretrained on large-scale biological sequences, have recently shown strong potential in providing meaningful representations for diverse downstream bioinformatics tasks. However, such models often rely on millions to billions of training sequences and billions

Cited by 0SourcePDFScholar
2026

RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design

AAAI 2026technical

Biological sequences, including RNAs and proteins, share similarities with natural languages, enabling the application of advanced language models to various biological tasks. However, due to its flexibility and lack of experimental data, RNA is a particularly challenging biological ``language

Cited by 0SourcePDFScholar
2025

RBPtool: A Deep Language Model Framework for Multi-Resolution RBP-RNA Binding Prediction and RNA Molecule Design

EMNLP 2025

RNA-binding proteins (RBPs) play essential roles in post-transcriptional gene regulation via recognizing specific RNA molecules as well as modulating several key physiological processes in cellulo, represented by alternative splicing and RNA degradation. Despite extensive research, most existing app

Cited by 0SourcePDFScholar