4 accepted papers
Small-molecule ligands extend protein functionality beyond natural amino acids, enabling sophisticated processes like catalysis, signal transduction, and light harvesting. However, designing proteins with high affinity and selectivity for arbitrary ligands remains a major challenge. We present Palla…
We introduce Pallatom, an innovative protein generation model capable of producing protein structures with all-atom coordinates. Pallatom directly learns and models the joint distribution $P(\textit{structure}, \textit{seq})$ by focusing on $P(\textit{all-atom})$, effectively addressing the interdep…
Hyperparameter Optimization (HPO) plays a pivotal role in unleashing the potential of iterative machine learning models. This paper addresses a crucial aspect that has largely been overlooked in HPO: the impact of uncertainty in ML model training. The paper introduces the concept of uncertainty-awar…
The intensive computations in convolutional neural networks (CNNs) pose challenges for resource-constrained devices; eliminating redundant computations from convolution is essential. This paper gives a principled method to detect and avoid transient redundancy, a type of redundancy existing in input…