3 accepted papers
Predicting molecule-protein interactions (MPIs) is a fundamental task in computational biology, with crucial applications in drug discovery and molecular function annotation. However, existing MPI models face two major challenges. First, the scarcity of labeled molecule-protein pairs significantly l…
Contrastive Learning (CL) plays a crucial role in molecular representation learning, enabling unsupervised learning from large scale unlabeled molecule datasets. It has inspired various applications in molecular property prediction and drug design. However, existing molecular representation learning…
Learning unnormalized statistical models (e.g., energy-based models) is computationally challenging due to the complexity of handling the partition function. To eschew this complexity, noise-contrastive estimation (NCE) has been proposed by formulating the objective as the logistic loss of the real…