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Jose Pablo Folch

4 accepted papers

2025

BARK: A Fully Bayesian Tree Kernel for Black-box Optimization

ICML 2025poster

We perform Bayesian optimization using a Gaussian process perspective on Bayesian Additive Regression Trees (BART). Our BART Kernel (BARK) uses tree agreement to define a posterior over piecewise-constant functions, and we explore the space of tree kernels using a Markov chain Monte Carlo approach.…

Cited by 0Source ↗PDF ↗Scholar ↗
2025

The Catechol Benchmark: Time-series Solvent Selection Data for Few-shot Machine Learning

NeurIPS 2025poster

Machine learning has promised to change the landscape of laboratory chemistry, with impressive results in molecular property prediction and reaction retro-synthesis. However, chemical datasets are often inaccessible to the machine learning community as they tend to require cleaning, thorough underst…

Cited by 0Source ↗code ↗Scholar ↗
2024

Transition Constrained Bayesian Optimization via Markov Decision Processes

NeurIPS 2024poster

Bayesian optimization is a methodology to optimize black-box functions. Traditionally, it focuses on the setting where you can arbitrarily query the search space. However, many real-life problems do not offer this flexibility; in particular, the search space of the next query may depend on previous…

Cited by 5Source ↗PDF ↗Scholar ↗
2022

SnAKe: Bayesian Optimization with Pathwise Exploration

NeurIPS 2022accept

"Bayesian Optimization is a very effective tool for optimizing expensive black-box functions. Inspired by applications developing and characterizing reaction chemistry using droplet microfluidic reactors, we consider a novel setting where the expense of evaluating the function can increase significa…

Cited by 20Source ↗PDF ↗Scholar ↗