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Nicolo Fusi

9 accepted papers

2025

scGeneScope: A Treatment-Matched Single Cell Imaging and Transcriptomics Dataset and Benchmark for Treatment Response Modeling

NeurIPS 2025poster

Understanding cellular responses to chemical interventions is critical to the discovery of effective therapeutics. Because individual biological techniques often measure only one axis of cellular response at a time, high-quality multimodal datasets are needed to unlock a holistic understanding of ho…

Cited by 0SourceScholar
2024

Tag-LLM: Repurposing General-Purpose LLMs for Specialized Domains

ICML 2024poster

Large Language Models (LLMs) have demonstrated remarkable proficiency in understanding and generating natural language. However, their capabilities wane in highly specialized domains underrepresented in the pretraining corpus, such as physical and biomedical sciences. This work explores how to repur…

2023

Bayesian Optimization Over Iterative Learners with Structured Responses: A Budget-aware Planning Approach

AISTATS 2023poster

The rising growth of deep neural networks (DNNs) and datasets in size motivates the need for efficient solutions for simultaneous model selection and training. Many methods for hyperparameter optimization (HPO) of iterative learners, including DNNs, attempt to solve this problem by querying and lear…

2022

LANA: Latency Aware Network Acceleration

ECCV 2022poster

"We introduce latency-aware network acceleration (LANA)-an approach that builds on neural architecture search technique to accelerate neural networks. LANA consists of two phases: in the first phase, it trains many alternative operations for every layer of a target network using layer-wise feature m…

Cited by 17SourcePDFScholar
2022

Rapid Model Architecture Adaption for Meta-Learning

NeurIPS 2022accept

Network Architecture Search (NAS) methods have recently gathered much attention. They design networks with better performance and use a much shorter search time compared to traditional manual tuning. Despite their efficiency in model deployments, most NAS algorithms target a single task on a fixed h…

Cited by 6SourcePDFScholar
2021

Initialization and Regularization of Factorized Neural Layers

ICLR 2021poster

Factorized layers—operations parameterized by products of two or more matrices—occur in a variety of deep learning contexts, including compressed model training, certain types of knowledge distillation, and multi-head self-attention architectures. We study how to initialize and regularize deep nets…

2018

Gaussian Process Prior Variational Autoencoders

NeurIPS 2018poster

Variational autoencoders (VAE) are a powerful and widely-used class of models to learn complex data distributions in an unsupervised fashion. One important limitation of VAEs is the prior assumption that latent sample representations are independent and identically distributed. However, for many imp…

2018

Probabilistic Matrix Factorization for Automated Machine Learning

NeurIPS 2018poster

In order to achieve state-of-the-art performance, modern machine learning techniques require careful data pre-processing and hyperparameter tuning. Moreover, given the ever increasing number of machine learning models being developed, model selection is becoming increasingly important. Automating th…