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2 accepted papers

2025

ELBOing Stein: Variational Bayes with Stein Mixture Inference

ICLR 2025poster

Stein variational gradient descent (SVGD) (Liu & Wang, 2016) performs approximate Bayesian inference by representing the posterior with a set of particles. However, SVGD suffers from variance collapse, i.e. poor predictions due to underestimating uncertainty (Ba et al., 2021), even for moderately-di…

2022

Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder

ICLR 2022poster

We introduce a deep generative model for representation learning of biological sequences that, unlike existing models, explicitly represents the evolutionary process. The model makes use of a tree-structured Ornstein-Uhlenbeck process, obtained from a given phylogenetic tree, as an informative prior…

Cited by 4SourcePDFScholar