Pavel Strashnov — accepted AI-conference papers

2026

GeomMotif: A Benchmark for Arbitrary Geometric Preservation in Protein Generation

Pavel Strashnov, Andrey Shevtsov, Viacheslav Meshchaninov, Olga Kardymon, Dmitry Vetrov

ICLR 2026poster

Motif scaffolding in protein design involves generating complete protein structures while preserving the 3D geometry of designated structural fragments, analogous to image outpainting in computer vision. Current benchmarks focus on functional motifs, leaving general geometric preservation capabiliti…

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2025

Diffusion on Language Model Encodings for Protein Sequence Generation

Viacheslav Meshchaninov, Pavel Strashnov, Andrey Shevtsov, Fedor Nikolaev, Nikita Ivanisenko, Olga Kardymon +1

ICML 2025poster

Protein *sequence* design has seen significant advances through discrete diffusion and autoregressive approaches, yet the potential of continuous diffusion remains underexplored. Here, we present *DiMA*, a latent diffusion framework that operates on protein language model representations. Through sy…

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