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Shuwen Yang

6 accepted papers

2025

MolParser: End-to-end Visual Recognition of Molecule Structures in the Wild

ICCV 2025poster

In recent decades, chemistry publications and patents have increased rapidly. A significant portion of key information is embedded in molecular structure figures, complicating large-scale literature searches and limiting the application of large language models in fields such as biology, chemistry,…

Cited by 0SourcePDFScholar
2025

SciAssess: Benchmarking LLM Proficiency in Scientific Literature Analysis

NAACL 2025findings

Recent breakthroughs in Large Language Models (LLMs) have revolutionized scientific literature analysis. However, existing benchmarks fail to adequately evaluate the proficiency of LLMs in this domain, particularly in scenarios requiring higher-level abilities beyond mere memorization and the handli…

2022

Versatile Multi-stage Graph Neural Network for Circuit Representation

NeurIPS 2022accept

Due to the rapid growth in the scale of circuits and the desire for knowledge transfer from old designs to new ones, deep learning technologies have been widely exploited in Electronic Design Automation (EDA) to assist circuit design. In chip design cycles, we might encounter heterogeneous and diver…

Cited by 39SourcePDFScholar
2021

Conformation-Guided Molecular Representation with Hamiltonian Neural Networks

ICLR 2021poster

Well-designed molecular representations (fingerprints) are vital to combine medical chemistry and deep learning. Whereas incorporating 3D geometry of molecules (i.e. conformations) in their representations seems beneficial, current 3D algorithms are still in infancy. In this paper, we propose a nove…

Cited by 26SourcePDFScholar
2021

Deep Molecular Representation Learning via Fusing Physical and Chemical Information

NeurIPS 2021poster

Molecular representation learning is the first yet vital step in combining deep learning and molecular science. To push the boundaries of molecular representation learning, we present PhysChem, a novel neural architecture that learns molecular representations via fusing physical and chemical informa…

Cited by 31SourcePDFScholar
2020

Domain Adaptive Classification on Heterogeneous Information Networks

IJCAI 2020poster

Heterogeneous Information Networks (HINs) are ubiquitous structures in that they can depict complex relational data. Due to their complexity, it is hard to obtain sufficient labeled data on HINs, hampering classification on HINs. While domain adaptation (DA) techniques have been widely utilized in i…