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Weize Yuan

3 accepted papers

2026

Protein Structure Tokenization via Geometric Byte Pair Encoding

ICLR 2026poster

Protein structure is central to biological function, and enabling multimodal protein models requires joint reasoning over sequence, structure, and function. A key barrier is the lack of principled protein structure tokenizers (PSTs): existing approaches fix token size or rely on continuous vector co…

Cited by 0SourcecodeScholar
2025

Foundation Molecular Grammar: Multi-Modal Foundation Models Induce Interpretable Molecular Graph Languages

ICML 2025poster

Recent data-efficient molecular generation approaches exploit graph grammars to introduce interpretability into the generative models. However, grammar learning therein relies on expert annotation or unreliable heuristics for algorithmic inference. We propose Foundation Molecular Grammar (FMG), whic…

2024

Representing Molecules as Random Walks Over Interpretable Grammars

ICML 2024spotlight

Recent research in molecular discovery has primarily been devoted to small, drug-like molecules, leaving many similarly important applications in material design without adequate technology. These applications often rely on more complex molecular structures with fewer examples that are carefully des…

Cited by 3SourcePDFScholar