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Ziqi Ke

3 accepted papers

2020

A Convolutional Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

NeurIPS 2020poster

Haplotype assembly and viral quasispecies reconstruction are challenging tasks concerned with analysis of genomic mixtures using sequencing data. High-throughput sequencing technologies generate enormous amounts of short fragments (reads) which essentially oversample components of a mixture; the rep…