MediSwift: Efficient Sparse Pre-trained Biomedical Language Models

Abstract

Large language models (LLMs) are typically trained on general source data forvarious domains, but a recent surge in domain-specific LLMs has shown theirpotential to outperform general-purpose models in domain-specific tasks (e.g.,biomedicine). Although domain-specific pre-training enhances efficiency andleads to smaller models, the computational costs of training these LLMs remainhigh, posing budgeting challenges. We introduce MediSwift, a suite of biomedicalLMs that leverage sparse pre-training on domain-specific biomedical text data.By inducing up to 75% weight sparsity during the pre-training phase, MediSwiftachieves a 2-2.5x reduction in training FLOPs. Notably, all sparse pre-trainingwas performed on the Cerebras CS-2 system, which is specifically designed torealize the acceleration benefits from unstructured weight sparsity, therebysignificantly enhancing the efficiency of the MediSwift models. Throughsubsequent dense fine-tuning and strategic soft prompting, MediSwift modelsoutperform existing LLMs up to 7B parameters on biomedical tasks, setting newbenchmarks w.r.t efficiency-accuracy on tasks such as PubMedQA. Our results showthat sparse pre-training, along with dense fine-tuning and soft prompting,offers an effective method for creating high-performing, computationallyefficient models in specialized domains.