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Chenru Duan

5 accepted papers

2025

Efficient Evolutionary Search Over Chemical Space with Large Language Models

ICLR 2025poster

Molecular discovery, when formulated as an optimization problem, presents significant computational challenges because optimization objectives can be non-differentiable. Evolutionary Algorithms (EAs), often used to optimize black-box objectives in molecular discovery, traverse chemical space by perf…

2024

Doob's Lagrangian: A Sample-Efficient Variational Approach to Transition Path Sampling

NeurIPS 2024spotlight

Rare event sampling in dynamical systems is a fundamental problem arising in the natural sciences, which poses significant computational challenges due to an exponentially large space of trajectories. For settings where the dynamical system of interest follows a Brownian motion with known drift, the…

2024

Navigating Chemical Space with Latent Flows

NeurIPS 2024poster

Recent progress of deep generative models in the vision and language domain has stimulated significant interest in more structured data generation such as molecules. However, beyond generating new random molecules, efficient exploration and a comprehensive understanding of the vast chemical space ar…

2023

M$^2$Hub: Unlocking the Potential of Machine Learning for Materials Discovery

NeurIPS 2023poster

We introduce M$^2$Hub, a toolkit for advancing machine learning in materials discovery. Machine learning has achieved remarkable progress in modeling molecular structures, especially biomolecules for drug discovery. However, the development of machine learning approaches for modeling materials struc…

2023

Symmetry-Informed Geometric Representation for Molecules, Proteins, and Crystalline Materials

NeurIPS 2023poster

Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of chemistry, biology, and material discovery. For these scientific problems, molecules serve as the fundamental building b…