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Danai Koutra

23 accepted papers

2026

Glance for Context: Learning When to Leverage LLMs for Node-Aware GNN-LLM Fusion

ICLR 2026poster

Learning on text-attributed graphs has motivated the use of Large Language Models (LLMs) for graph learning. However, most fusion strategies are applied uniformly across all nodes and attain only small overall performance gains. We argue this result stems from aggregate metrics that obscure when LLM…

Cited by 0SourceScholar
2026

GraphTextack: A Realistic Black-Box Node Injection Attack on LLM-Enhanced GNNs

AAAI 2026technical

Text-attributed graphs (TAGs), which combine structural and textual node information, are ubiquitous across many domains. Recent work integrates Large Language Models (LLMs) with Graph Neural Networks (GNNs) to jointly model semantics and structure, resulting in more general and expressive models th

Cited by 0SourcePDFScholar
2025

A Large-scale Training Paradigm for Graph Generative Models

ICLR 2025poster

Large Generative Models (LGMs) such as GPT, Stable Diffusion, Sora, and Suno are trained on a huge amount of texts, images, videos, and audio that are extremely diverse from numerous domains. This large-scale training paradigm on diverse well-curated data enhances the creativity and diversity of the…

2025

Demystifying the Power of Large Language Models in Graph Generation

NAACL 2025findings

Despite the unprecedented success of applying Large Language Models (LLMs) to graph discriminative tasks such as node classification and link prediction, its potential for graph structure generation remains largely unexplored. To fill this crucial gap, this paper presents a systematic investigation…

2025

Learning Laplacian Positional Encodings for Heterophilous Graphs

AISTATS 2025poster

In this work, we theoretically demonstrate that current graph positional encodings (PEs) are not beneficial and could potentially hurt performance in tasks involving heterophilous graphs, where nodes that are close tend to have different labels. This limitation is critical as many real-world network…

Cited by 0SourceScholar
2025

Mosaic of Modalities: A Comprehensive Benchmark for Multimodal Graph Learning

CVPR 2025poster

Graph machine learning has made significant strides in recent years, yet the integration of visual information with graph structure and its potential for improving performance in downstream tasks remains an underexplored area. To address this critical gap, we introduce the Multimodal Graph Benchmark…

2024

Accurate and Scalable Estimation of Epistemic Uncertainty for Graph Neural Networks

ICLR 2024poster

While graph neural networks (GNNs) are widely used for node and graph representation learning tasks, the reliability of GNN uncertainty estimates under distribution shifts remains relatively under-explored. Indeed, while post-hoc calibration strategies can be used to improve in-distribution calibrat…

Cited by 4SourcePDFScholar
2024

Editing Partially Observable Networks via Graph Diffusion Models

ICML 2024poster

Most real-world networks are noisy and incomplete samples from an unknown target distribution. Refining them by correcting corruptions or inferring unobserved regions typically improves downstream performance. Inspired by the impressive generative capabilities that have been used to correct corrupti…

Cited by 1SourcePDFScholar
2024

Multi-Stage Balanced Distillation: Addressing Long-Tail Challenges in Sequence-Level Knowledge Distillation

EMNLP 2024finding

Large language models (LLMs) have significantly advanced various natural language processing tasks, but deploying them remains computationally expensive. Knowledge distillation (KD) is a promising solution, enabling the transfer of capabilities from larger teacher LLMs to more compact student models…

2024

On Estimating Link Prediction Uncertainty Using Stochastic Centering

ICASSP 2024accepted

Accurate confidence estimates are crucial for safe graph neural network (GNN) deployment, yet link prediction (LP) calibration is understudied. We provide novel insights into LP calibration by highlighting the importance of meaningful node-level uncertainties. In response, we propose E-ΔUQ, an archi…

Cited by 0SourceScholar
2024

On the Impact of Feature Heterophily on Link Prediction with Graph Neural Networks

NeurIPS 2024poster

Heterophily, or the tendency of connected nodes in networks to have different class labels or dissimilar features, has been identified as challenging for many Graph Neural Network (GNN) models. While the challenges of applying GNNs for node classification when class labels display strong heterophily…

Cited by 1SourcePDFScholar
2023

A Closer Look At Scoring Functions And Generalization Prediction

ICASSP 2023accepted

Generalization error predictors (GEPs) aim to predict model performance on unseen distributions by deriving dataset-level error estimates from sample-level scores. However, GEPs often utilize disparate mechanisms (e.g., regressors, thresholding functions, calibration datasets, etc), to derive such e…

Cited by 0SourceScholar
2023

A Closer Look at Model Adaptation using Feature Distortion and Simplicity Bias

ICLR 2023top-25%

Advances in the expressivity of pretrained models have increased interest in the design of adaptation protocols which enable safe and effective transfer learning. Going beyond conventional linear probing (LP) and fine tuning (FT) strategies, protocols that can effectively control feature distortion,…

Cited by 24SourcePDFScholar
2023

A Provable Framework of Learning Graph Embeddings via Summarization

AAAI 2023technical

Given a large graph, can we learn its node embeddings from a smaller summary graph? What is the relationship between embeddings learned from original graphs and their summary graphs? Graph representation learning plays an important role in many graph mining applications, but learning em-beddings of…

2022

Analyzing Data-Centric Properties for Graph Contrastive Learning

NeurIPS 2022accept

Recent analyses of self-supervised learning (SSL) find the following data-centric properties to be critical for learning good representations: invariance to task-irrelevant semantics, separability of classes in some latent space, and recoverability of labels from augmented samples. However, given th…

2021

Graph Neural Networks with Heterophily

AAAI 2021technical

Graph Neural Networks (GNNs) have proven to be useful for many different practical applications. However, many existing GNN models have implicitly assumed homophily among the nodes connected in the graph, and therefore have largely overlooked the important setting of heterophily, where most connecte…

2021

NegatER: Unsupervised Discovery of Negatives in Commonsense Knowledge Bases

EMNLP 2021main

Codifying commonsense knowledge in machines is a longstanding goal of artificial intelligence. Recently, much progress toward this goal has been made with automatic knowledge base (KB) construction techniques. However, such techniques focus primarily on the acquisition of positive (true) KB statemen…

2020

Beyond Homophily in Graph Neural Networks: Current Limitations and Effective Designs

NeurIPS 2020poster

We investigate the representation power of graph neural networks in the semi-supervised node classification task under heterophily or low homophily, i.e., in networks where connected nodes may have different class labels and dissimilar features. Many popular GNNs fail to generalize to this setting,…

2020

Neural Execution Engines: Learning to Execute Subroutines

NeurIPS 2020poster

A significant effort has been made to train neural networks that replicate algorithmic reasoning, but they often fail to learn the abstract concepts underlying these algorithms. This is evidenced by their inability to generalize to data distributions that are outside of their restricted training set…