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Ernest Fraenkel

3 accepted papers

2026

CHAMMI-75: pre-training multi-channel models with heterogeneous microscopy images

ICLR 2026poster

Quantifying cell morphology using images and machine learning has proven to be a powerful tool to study the response of cells to treatments. However, the models used to quantify cellular morphology are typically trained with a single microscopy imaging type and under controlled experimental conditio…

Cited by 0SourcecodeScholar
2023

Efficiently predicting high resolution mass spectra with graph neural networks

ICML 2023poster

Identifying a small molecule from its mass spectrum is the primary open problem in computational metabolomics. This is typically cast as information retrieval: an unknown spectrum is matched against spectra predicted computationally from a large database of chemical structures. However, current appr…

Cited by 32SourcePDFScholar
2023

SubseasonalClimateUSA: A Dataset for Subseasonal Forecasting and Benchmarking

NeurIPS 2023poster

Subseasonal forecasting of the weather two to six weeks in advance is critical for resource allocation and advance disaster notice but poses many challenges for the forecasting community. At this forecast horizon, physics-based dynamical models have limited skill, and the targets for prediction depe…