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Fandi Wu

3 accepted papers

2026

ProteinAE: Protein Diffusion Autoencoders for Structure Encoding

ICLR 2026poster

Developing effective representations of protein structures is essential for advancing protein science, particularly for protein generative modeling. Current approaches often grapple with the complexities of the $\operatorname{SE}(3)$ manifold, rely on discrete tokenization, or the need for multiple…

Cited by 0SourcecodeScholar
2025

IgGM: A Generative Model for Functional Antibody and Nanobody Design

ICLR 2025poster

Immunoglobulins are crucial proteins produced by the immune system to identify and bind to foreign substances, playing an essential role in shielding organisms from infections and diseases. Designing specific antibodies opens new pathways for disease treatment. With the rise of deep learning, AI-dri…

2025

dyAb: Flow Matching for Flexible Antibody Design with AlphaFold-driven Pre-binding Antigen

AAAI 2025technical

The development of therapeutic antibodies heavily relies on accurate predictions of how antigens will interact with antibodies. Existing computational methods in antibody design often overlook crucial conformational changes that antigens undergo during the binding process, significantly impacting th…