5 accepted papers
Large Language Model (LLM) agents have demonstrated remarkable proficiency in solving isolated software engineering tasks. However, existing benchmarks predominantly evaluate static, independent issues, failing to reflect the continuous and sequentially dependent nature of real-world software evolut…
Current chemical large language models (LLMs) predominantly rely on explicit Chain-of-Thought (CoT) to solve complex reasoning problems. However, forcing nonverbal tacit chemical logic into discrete natural language imposes a fundamental ``modality mismatch,'' creating an artificial bottleneck for r…
DNA, encoding genetic instructions for almost all living organisms, fuels groundbreaking advances in genomics and synthetic biology. Recently, DNA Language Models have achieved success in designing synthetic functional DNA sequences, even whole genomes of novel bacteriophage, verified with wet lab e…
DNA language models have revolutionized our ability to design and manipulate DNA sequences—the fundamental language of life—with unprecedented precision, enabling transformative applications in therapeutics, synthetic biology, and gene editing. However, this capability also poses significant dual-us…
Directed Evolution (DE), a landmark wet-lab method originated in 1960s, enables discovery of novel protein designs via evolving a population of candidate sequences. Recent advances in biotechnology has made it possible to collect high-throughput data, allowing the use of machine learning to map out…