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Louis Blankemeier

5 accepted papers

2025

Time-to-Event Pretraining for 3D Medical Imaging

ICLR 2025poster

With the rise of medical foundation models and the growing availability of imaging data, scalable pretraining techniques offer a promising way to identify imaging biomarkers predictive of future disease risk. While current self-supervised methods for 3D medical imaging models capture local structura…

2024

GREEN: Generative Radiology Report Evaluation and Error Notation

EMNLP 2024finding

Evaluating radiology reports is a challenging problem as factual correctness is extremely important due to its medical nature. Existing automatic evaluation metrics either suffer from failing to consider factual correctness (e.g., BLEU and ROUGE) or are limited in their interpretability (e.g., F1Che…

Cited by 19SourcePDFScholar
2024

MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records

AAAI 2024technical

The ability of large language models (LLMs) to follow natural language instructions with human-level fluency suggests many opportunities in healthcare to reduce administrative burden and improve quality of care. However, evaluating LLMs on realistic text generation tasks for healthcare remains chall…

Cited by 67SourcePDFScholar
2024

RadGraph-XL: A Large-Scale Expert-Annotated Dataset for Entity and Relation Extraction from Radiology Reports

ACL 2024findings

In order to enable extraction of structured clinical data from unstructured radiology reports, we introduce RadGraph-XL, a large-scale, expert-annotated dataset for clinical entity and relation extraction. RadGraph-XL consists of 2,300 radiology reports, which are annotated with over 410,000 entitie…

2023

Efficient Diagnosis Assignment Using Unstructured Clinical Notes

ACL 2023short

Electronic phenotyping entails using electronic health records (EHRs) to identify patients with specific health outcomes and determine when those outcomes occurred. Unstructured clinical notes, which contain a vast amount of information, are a valuable resource for electronic phenotyping. However, t…

Cited by 2SourcePDFScholar