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Namkyeong Lee

11 accepted papers

2026

IR-Agent: Expert-Inspired LLM Agents for Structure Elucidation from Infrared Spectra

ICLR 2026poster

Spectral analysis provides crucial clues for the elucidation of unknown materials. Among various techniques, infrared spectroscopy (IR) plays an important role in laboratory settings due to its high accessibility and low cost. However, existing approaches often fail to reflect expert analytical proc…

Cited by 0SourcecodeScholar
2026

RAG-Enhanced Collaborative LLM Agents for Drug Discovery

AAAI 2026technical

Recent advances in large language models (LLMs) have shown great potential to accelerate drug discovery. However, the specialized nature of biochemical data often necessitates costly domain-specific fine-tuning, posing critical challenges. First, it hinders the application of more flexible general-p

Cited by 0SourcePDFScholar
2025

3D Interaction Geometric Pre-training for Molecular Relational Learning

NeurIPS 2025spotlight

Molecular Relational Learning (MRL) is a rapidly growing field that focuses on understanding the interaction dynamics between molecules, which is crucial for applications ranging from catalyst engineering to drug discovery. Despite recent progress, earlier MRL approaches are limited to using only t…

Cited by 0SourcecodeScholar
2025

Global Context-aware Representation Learning for Spatially Resolved Transcriptomics

ICML 2025poster

Spatially Resolved Transcriptomics (SRT) is a cutting-edge technique that captures the spatial context of cells within tissues, enabling the study of complex biological networks. Recent graph-based methods leverage both gene expression and spatial information to identify relevant spatial domains. Ho…

Cited by 0SourcePDFScholar
2025

Subgraph Federated Learning for Local Generalization

ICLR 2025oral

Federated Learning (FL) on graphs enables collaborative model training to enhance performance without compromising the privacy of each client. However, existing methods often overlook the mutable nature of graph data, which frequently introduces new nodes and leads to shifts in label distribution. S…

2025

Thickness-aware E(3)-Equivariant 3D Mesh Neural Networks

ICML 2025poster

Mesh-based 3D static analysis methods have recently emerged as efficient alternatives to traditional computational numerical solvers, significantly reducing computational costs and runtime for various physics-based analyses. However, these methods primarily focus on surface topology and geometry, of…

Cited by 0SourcePDFScholar
2024

Retrieval-Retro: Retrieval-based Inorganic Retrosynthesis with Expert Knowledge

NeurIPS 2024poster

While inorganic retrosynthesis planning is essential in the field of chemical science, the application of machine learning in this area has been notably less explored compared to organic retrosynthesis planning. In this paper, we propose Retrieval-Retro for inorganic retrosynthesis planning, which i…

2023

Conditional Graph Information Bottleneck for Molecular Relational Learning

ICML 2023poster

Molecular relational learning, whose goal is to learn the interaction behavior between molecular pairs, got a surge of interest in molecular sciences due to its wide range of applications. Recently, graph neural networks have recently shown great success in molecular relational learning by modeling…

2023

Density of States Prediction of Crystalline Materials via Prompt-guided Multi-Modal Transformer

NeurIPS 2023poster

The density of states (DOS) is a spectral property of crystalline materials, which provides fundamental insights into various characteristics of the materials. While previous works mainly focus on obtaining high-quality representations of crystalline materials for DOS prediction, we focus on predict…

2023

Heterogeneous Graph Learning for Multi-Modal Medical Data Analysis

AAAI 2023technical

Routine clinical visits of a patient produce not only image data, but also non-image data containing clinical information regarding the patient, i.e., medical data is multi-modal in nature. Such heterogeneous modalities offer different and complementary perspectives on the same patient, resulting in…