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Nima Shoghi

3 accepted papers

2026

Scalable Spatio-Temporal SE(3) Diffusion for Long-Horizon Protein Dynamics

ICLR 2026poster

Molecular dynamics (MD) simulations remain the gold standard for studying protein dynamics, but their computational cost limits access to biologically relevant timescales. Recent generative models have shown promise in accelerating simulations, yet they struggle with long-horizon generation due to a…

Cited by 0SourceScholar
2025

RoFt-Mol: Benchmarking Robust Fine-tuning with Molecular Graph Foundation Models

NeurIPS 2025spotlight

In the era of foundation models, fine-tuning pre-trained models for specific downstream tasks has become crucial. This drives the need for robust fine-tuning methods to address challenges such as model overfitting and sparse labeling. Molecular graph foundation models (MGFMs) face unique difficultie…

Cited by 0SourceScholar
2024

From Molecules to Materials: Pre-training Large Generalizable Models for Atomic Property Prediction

ICLR 2024poster

Foundation models have been transformational in machine learning fields such as natural language processing and computer vision. Similar success in atomic property prediction has been limited due to the challenges of training effective models across multiple chemical domains. To address this, we int…