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Shiqiang Ma

9 accepted papers

2026

Bridging the Biophysical Gap: Holistic Environmental Awareness for 3D Linker Design

IJCAI 2026

3D molecular linker design is a critical task in structure-based drug discovery, which requires the precise synthesis of chemical bridges to connect fragments within the constrained environment of a protein binding pocket. Existing methods often suffer from environmental blindness, treating the inte

Cited by 0Scholar
2026

Closer to Biological Mechanism: Drug-Drug Interaction Prediction from the Perspective of Pharmacophore

AAAI 2026technical

Drug combinations are widely used in modern medicine but may cause severe adverse drug reactions. Therefore, making effective drug-drug interactions (DDI) prediction is crucial for pharmacovigilance. Existing DDI prediction models are typically built from a structural perspective, assuming that drug

Cited by 0SourcePDFScholar
2026

Less Is More: Proportional Memory-Guided Differential-Attention MIL for Whole-Slide Image Classification

IJCAI 2026

Whole-slide images (WSIs) provide gigapixel-scale visual evidence for cancer diagnosis, yet diagnostically relevant regions are typically sparse and embedded within large amounts of weakly informative tissue. Existing multiple instance learning methods often aggregate all patches by using attention

Cited by 0Scholar
2026

Make Foundation Models Trustworthy Again: Causal Fine-Adaptation for Medical Image Segmentation

AAAI 2026technical

Vision foundation models (e.g., SAM2, CLIP) show strong generalization in natural image analysis but degrade significantly in specialized domains like medical imaging. This is critical for tasks such as brain tumor segmentation, where errors directly affect surgical planning and patient outcomes. In

Cited by 0SourcePDFScholar
2026

PharmaQA: Prompt-Based Molecular Representation Learning via Pharmacophore-Oriented Question Answering

AAAI 2026technical

Molecular representation plays a central role in computational drug discovery. Pharmacophores, functional groups responsible for molecular bioactivity, have been widely studied in cheminformatics. However, their incorporation into molecular representation learning, particularly in a context reasonin

Cited by 0SourcePDFScholar
2026

Piercing the Fog: Disentangling Key Features for Vision Models in Multi-Degradation Scenarios

AAAI 2026technical

In natural scenarios, vision models often encounter the challenge of complex degradation scenarios(e.g., rain, snow, fog, or motion blur). These degradations severely corrupt image features, causing existing models to treat rarely seen or unseen degraded images as “unfamiliar”, thereby losing their

Cited by 0SourcePDFScholar
2025

DynaPhArM: Adaptive and Physics-Constrained Modeling for Target-Drug Complexes with Drug-Specific Adaptations

NeurIPS 2025poster

Accurately modeling the target-drug complex at atom level presents a significant challenge in the computer-aided drug design. Traditional methods that rely solely on rigid transformations often fail to capture the adaptive interactions between targets and drugs, particularly during substantial confo…

Cited by 0SourceScholar
2025

Unlocking Dark Vision Potential for Medical Image Segmentation

IJCAI 2025

Accurate segmentation of lesions is crucial for disease diagnosis and treatment planning. However, blurring and low contrast in the imaging process can affect segmentation results. We have observed that noninvasive medical imaging shares considerable similarities with natural images under low light

Cited by 0SourcePDFScholar