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Uygar Sümbül

8 accepted papers

2026

Identifying Connectivity Distributions from Neural Dynamics Using Flows

ICML 2026poster

Connectivity structure shapes neural computation, but inferring this structure from population recordings is degenerate: multiple connectivity structures can generate identical dynamics. Recent work uses low-rank recurrent neural networks (lrRNNs) to infer low-dimensional latent dynamics and connect…

Cited by 0SourceScholar
2025

Efficient Connectivity-Preserving Instance Segmentation with Supervoxel-Based Loss Function

AAAI 2025technical

Reconstructing the intricate local morphology of neurons and their long-range projecting axons can address many connectivity related questions in neuroscience. The main bottleneck in connectomics pipelines is correcting topological errors, as multiple entangled neuronal arbors is a challenging insta…

2025

NetFormer: An interpretable model for recovering dynamical connectivity in neuronal population dynamics

ICLR 2025spotlight

Neuronal dynamics are highly nonlinear and nonstationary. Traditional methods for extracting the underlying network structure from neuronal activity recordings mainly concentrate on modeling static connectivity, without accounting for key nonstationary aspects of biological neural systems, such as o…

Cited by 0SourcePDFScholar
2025

SPINT: Spatial Permutation-Invariant Neural Transformer for Consistent Intracortical Motor Decoding

NeurIPS 2025poster

Intracortical Brain-Computer Interfaces (iBCI) decode behavior from neural population activity to restore motor functions and communication abilities in individuals with motor impairments. A central challenge for long-term iBCI deployment is the nonstationarity of neural recordings, where the compos…

Cited by 0SourceScholar
2023

Learning Time-Invariant Representations for Individual Neurons from Population Dynamics

NeurIPS 2023poster

Neurons can display highly variable dynamics. While such variability presumably supports the wide range of behaviors generated by the organism, their gene expressions are relatively stable in the adult brain. This suggests that neuronal activity is a combination of its time-invariant identity and th…

2022

Biologically-plausible backpropagation through arbitrary timespans via local neuromodulators

NeurIPS 2022accept

The spectacular successes of recurrent neural network models where key parameters are adjusted via backpropagation-based gradient descent have inspired much thought as to how biological neuronal networks might solve the corresponding synaptic credit assignment problem [1, 2, 3]. There is so far litt…

2019

A coupled autoencoder approach for multi-modal analysis of cell types

NeurIPS 2019poster

Recent developments in high throughput profiling of individual neurons have spurred data driven exploration of the idea that there exist natural groupings of neurons referred to as cell types. The promise of this idea is that the immense complexity of brain circuits can be reduced, and effectively s…

2016

Automated scalable segmentation of neurons from multispectral images

NeurIPS 2016poster

Reconstruction of neuroanatomy is a fundamental problem in neuroscience. Stochastic expression of colors in individual cells is a promising tool, although its use in the nervous system has been limited due to various sources of variability in expression. Moreover, the intermingled anatomy of neurona…

Cited by 23SourcePDFScholar