27 accepted papers
Knowledge editing has emerged as an effective approach for updating large language models (LLMs) by modifying their internal knowledge. However, their application to the biomedical domain faces unique challenges due to the long-tailed distribution of biomedical knowledge, where rare and infrequent i
In recommender systems, multi-behavior methods have demonstrated significant effectiveness in addressing issues such as data sparsity—challenges commonly encountered by traditional single-behavior recommendation methods. These methods typically infer user preferences from various auxiliary behaviors
Predicting drug-target interaction (DTI) is critical in the drug discovery process. Despite remarkable advances in recent DTI models through the integration of representations from diverse drug and target encoders, such models often struggle to capture the fine-grained interactions between drugs and
Iterative retrieval-augmented generation (iRAG) models offer an effective approach for multihop question answering (QA). However, their retrieval processes face two key challenges: (1) they can be disrupted by irrelevant documents or factually inaccurate chain-of-thoughts; (2) their retrievers are n…
Radiology report generation (RRG) requires advanced medical image analysis, effective temporal reasoning, and accurate text generation. While multimodal large language models (MLLMs) align with pre-trained vision encoders to enhance visual-language understanding, most existing methods rely on single…
Temporal question answering is an established method for evaluating temporal reasoning in large language models. Expected answers are often numeric (e.g., dates or durations), yet model responses are evaluated like regular text with exact match (EM), unable to distinguish small from large errors. In
Infectious disease outbreaks continue to pose a significant threat to human health and well-being. To improve disease surveillance and understanding of disease spread, several surveillance systems have been developed to monitor daily news alerts and social media. However, existing systems lack thoro…
Transformer-based Large Language Models (LLMs) are pioneering advances in many natural language processing tasks, however, their exceptional capabilities are restricted within the preset context window of Transformer. Position Embedding (PE) scaling methods, while effective in extending the context…
Position bias in large language models (LLMs) leads to difficulty in accessing information retrieved from the retriever, thus downgrading the effectiveness of Retrieval-Augmented Generation (RAG) approaches in open-question answering. Recent studies reveal that this bias is related to disproportiona…
Vision Transformers (ViTs) have emerged as popular models in computer vision, demonstrating state-of-the-art performance across various tasks. This success typically follows a two-stage strategy involving pre-training on large-scale datasets using self-supervised signals, such as masked random patch…
Open domain question answering (ODQA) aims to answer questions with knowledge from an external corpus. Fusion-in-Decoder (FiD) is an effective retrieval-augmented reader model to address this task. Given that FiD independently encodes passages, which overlooks the semantic relationships between pass…
Retrieval-augmented generation (RAG) offers an effective approach for addressing question answering (QA) tasks. However, the imperfections of the retrievers in RAG models often result in the retrieval of irrelevant information, which could introduce noise and degrade the performance, especially when…
Medical open-domain question answering demands substantial access to specialized knowledge. Recent efforts have sought to decouple knowledge from model parameters, counteracting architectural scaling and allowing for training on common low-resource hardware. The retrieve-then-read paradigm has becom…
Biomedical named entity recognition is one of the core tasks in biomedical natural language processing (BioNLP). To tackle this task, numerous supervised/distantly supervised approaches have been proposed. Despite their remarkable success, these approaches inescapably demand laborious human effort.…
Key information extraction (KIE) from scanned documents has gained increasing attention because of its applications in various domains. Although promising results have been achieved by some recent KIE approaches, they are usually built based on discriminative models, which lack the ability to handle…
This paper focuses on the task of cross domain few-shot named entity recognition (NER), which aims to adapt the knowledge learned from source domain to recognize named entities in target domain with only a few labeled examples. To address this challenging task, we propose MANNER, a variational memor…
Learning effective representations of entities and relations for knowledge graphs (KGs) is critical to the success of many multi-relational learning tasks. Existing methods based on graph neural networks learn a deterministic embedding function, which lacks sufficient flexibility to explore better c…
Parameter-Efficient Tuning (PETuning) methods have been deemed by many as the new paradigm for using pretrained language models (PLMs). By tuning just a fraction amount of parameters comparing to full model finetuning, PETuning methods claim to have achieved performance on par with or even better th…
Knowledge probing is crucial for understanding the knowledge transfer mechanism behind the pre-trained language models (PLMs). Despite the growing progress of probing knowledge for PLMs in the general domain, specialised areas such as the biomedical domain are vastly under-explored. To facilitate th…
Masked language models (MLMs) such as BERT have revolutionized the field of Natural Language Understanding in the past few years. However, existing pre-trained MLMs often output an anisotropic distribution of token representations that occupies a narrow subset of the entire representation space. Suc…
Neural table-to-text generation models have achieved remarkable progress on an array of tasks. However, due to the data-hungry nature of neural models, their performances strongly rely on large-scale training examples, limiting their applicability in real-world applications. To address this, we prop…
Infusing factual knowledge into pre-trained models is fundamental for many knowledge-intensive tasks. In this paper, we proposed Mixture-of-Partitions (MoP), an infusion approach that can handle a very large knowledge graph (KG) by partitioning it into smaller sub-graphs and infusing their specific…
Despite the widespread success of self-supervised learning via masked language models (MLM), accurately capturing fine-grained semantic relationships in the biomedical domain remains a challenge. This is of paramount importance for entity-level tasks such as entity linking where the ability to model…
Gaussian Processes (GPs) define distributions over functions and their generalization capabilities depend heavily on the choice of kernels. In this paper, we propose a novel structure-aware random Fourier (SRF) kernel for GPs that brings several benefits when modeling graph-structured data. First, S…
Conventional meta-learning considers a set of tasks from a stationary distribution. In contrast, this paper focuses on a more complex online setting, where tasks arrive sequentially and follow a non-stationary distribution. Accordingly, we propose a Variational Continual Bayesian Meta-Learning (VC-B…
Deep quantization methods have shown high efficiency on large-scale image retrieval. However, current models heavily rely on ground-truth information, hindering the application of quantization in label-hungry scenarios. A more realistic demand is to learn from inexhaustible uploaded images that are…
Deep generative models (DGMs) have achieved remarkable advances. Semi-supervised variational auto-encoders (SVAE) as a classical DGM offers a principled framework to effective generalize from small labelled data to large unlabelled ones, but it is difficult to incorporate rich unstructured relations…