COLING 2025main71 citations

InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery

He Cao, Zijing Liu, Xingyu Lu, Yuan Yao, Yu Li

Abstract

The rapid evolution of artificial intelligence in drug discovery encounters challenges with generalization and extensive training, yet Large Language Models (LLMs) offer promise in reshaping interactions with complex molecular data. Our novel contribution, InstructMol, a multi-modal LLM, effectively aligns molecular structures with natural language via an instruction-tuning approach, utilizing a two-stage training strategy that adeptly combines limited domain-specific data with molecular and textual information. InstructMol showcases substantial performance improvements in drug discovery-related molecular tasks, surpassing leading LLMs and significantly reducing the gap with specialists, thereby establishing a robust foundation for a versatile and dependable drug discovery assistant.

BibTeX
@inproceedings{cao-etal-2025-instructmol,
    title = "{I}nstruct{M}ol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery",
    author = "Cao, He  and
      Liu, Zijing  and
      Lu, Xingyu  and
      Yao, Yuan  and
      Li, Yu",
    editor = "Rambow, Owen  and
      Wanner, Leo  and
      Apidianaki, Marianna  and
      Al-Khalifa, Hend  and
      Eugenio, Barbara Di  and
      Schockaert, Steven",
    booktitle = "Proceedings of the 31st International Conference on Computational Linguistics",
    month = jan,
    year = "2025",
    address = "Abu Dhabi, UAE",
    publisher = "Association for Computational Linguistics",
    url = "https://aclanthology.org/2025.coling-main.25/",
    pages = "354--379"
}
InstructMol: Multi-Modal Integration for Building a Versatile and Reliable Molecular Assistant in Drug Discovery · COLING 2025