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Fajie Yuan

6 accepted papers

2024

SaProt: Protein Language Modeling with Structure-aware Vocabulary

ICLR 2024spotlight

Large-scale protein language models (PLMs), such as the ESM family, have achieved remarkable performance in various downstream tasks related to protein structure and function by undergoing unsupervised training on residue sequences. They have become essential tools for researchers and practitioners…

2022

Exploring evolution-aware & -free protein language models as protein function predictors

NeurIPS 2022accept

Large-scale Protein Language Models (PLMs) have improved performance in protein prediction tasks, ranging from 3D structure prediction to various function predictions. In particular, AlphaFold, a ground-breaking AI system, could potentially reshape structural biology. However, the utility of the PLM…

2022

Tenrec: A Large-scale Multipurpose Benchmark Dataset for Recommender Systems

NeurIPS 2022accept

Existing benchmark datasets for recommender systems (RS) either are created at a small scale or involve very limited forms of user feedback. RS models evaluated on such datasets often lack practical values for large-scale real-world applications. In this paper, we describe Tenrec, a novel and publ…

2021

A User-Adaptive Layer Selection Framework for Very Deep Sequential Recommender Models

AAAI 2021technical

Sequential recommender systems (SRS) have become a research hotspot in recent studies. Because of the requirement in capturing user's dynamic interests, sequential neural network based recommender models often need to be stacked with more hidden layers (e.g., up to 100 layers) compared with standard…

Cited by 12SourcePDFScholar
2021

Continual Learning for Task-oriented Dialogue System with Iterative Network Pruning, Expanding and Masking

ACL 2021short

This ability to learn consecutive tasks without forgetting how to perform previously trained problems is essential for developing an online dialogue system. This paper proposes an effective continual learning method for the task-oriented dialogue system with iterative network pruning, expanding, and…