4 accepted papers
Large pretrained protein language models (PLMs) have improved protein property and structure prediction from sequences via transfer learning, in which weights and representations from PLMs are repurposed for downstream tasks. Although PLMs have shown great promise, currently there is little understa…
Large-scale Protein Language Models (PLMs) have improved performance in protein prediction tasks, ranging from 3D structure prediction to various function predictions. In particular, AlphaFold, a ground-breaking AI system, could potentially reshape structural biology. However, the utility of the PLM…
Machine learning could enable an unprecedented level of control in protein engineering for therapeutic and industrial applications. Critical to its use in designing proteins with desired properties, machine learning models must capture the protein sequence-function relationship, often termed fitness…
In many high-throughput experimental design settings, such as those common in biochemical engineering, batched queries are often more cost effective than one-by-one sequential queries. Furthermore, it is often not possible to directly choose items to query. Instead, the experimenter specifies a set…