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Jin Su

4 accepted papers

2024

Protein 3D Graph Structure Learning for Robust Structure-Based Protein Property Prediction

AAAI 2024technical

Protein structure-based property prediction has emerged as a promising approach for various biological tasks, such as protein function prediction and sub-cellular location estimation. The existing methods highly rely on experimental protein structure data and fail in scenarios where these data are u…

Cited by 12SourcePDFScholar
2024

SaProt: Protein Language Modeling with Structure-aware Vocabulary

ICLR 2024spotlight

Large-scale protein language models (PLMs), such as the ESM family, have achieved remarkable performance in various downstream tasks related to protein structure and function by undergoing unsupervised training on residue sequences. They have become essential tools for researchers and practitioners…

2022

Exploring evolution-aware & -free protein language models as protein function predictors

NeurIPS 2022accept

Large-scale Protein Language Models (PLMs) have improved performance in protein prediction tasks, ranging from 3D structure prediction to various function predictions. In particular, AlphaFold, a ground-breaking AI system, could potentially reshape structural biology. However, the utility of the PLM…