6 accepted papers
Single-cell transcriptomics and proteomics have become a great source for data-driven insights into biology, enabling the use of advanced deep learning methods to understand cellular heterogeneity and gene expression at the single-cell level. With the advent of spatial-omics data, we have the promis…
Embedding geometry plays a fundamental role in retrieval quality, yet dense retrievers for retrieval-augmented generation (RAG) remain largely confined to Euclidean space. However, natural language exhibits hierarchical structure from broad topics to specific entities that Euclidean embeddings fail …
Frontier large language models (LLMs) have shown great success in text modeling and generation tasks across domains. However, natural language exhibits inherent semantic hierarchies and nuanced geometric structure, which current LLMs do not capture completely owing to their reliance on Euclidean ope…
In this paper, we propose HiPoNet, an end-to-end differentiable neural network for regression, classification, and representation learning on high-dimensional point clouds. Our work is motivated by single-cell data which can have very high-dimensionality --exceeding the capabilities of existing meth…
Simplicial neural network models are becoming popular for processing and analyzing higher-order graph data, but they suffer from high training complexity and dependence on task-specific labels. To address these challenges, we propose simplicial scattering networks (SSNs), a parameter-free model insp…
In this paper, we introduce $\texttt{TopoSRL}$, a novel self-supervised learning (SSL) method for simplicial complexes to effectively capture higher-order interactions and preserve topology in the learned representations. $\texttt{TopoSRL}$ addresses the limitations of existing graph-based SSL metho…