34 accepted papers
Graph clustering is a fundamental task in data analysis, aiming at grouping nodes with similar characteristics in the graph into clusters. This problem has been widely explored using graph neural networks (GNNs) due to their ability to leverage node attributes and graph topology for effective cluste…
Each layer of a Transformer refines the hidden state toward a prediction, an iterative process resembling fixed-point iteration. Yet when should this iteration terminate? Existing early exit methods rely on output confidence as a proxy for internal convergence. We take a more direct approach by exam…
This paper studies the problem of open-set graph anomaly detection, which aims to generalize a graph neural network (GNN) trained with a small number of both normal and abnormal nodes to detect unseen anomalies different from training anomalies during inference. This problem is highly challenging du…
Spatial transcriptomics (ST) enables joint profiling of gene expression and spatial positions, thereby revealing spatially resolved biological functions. However, many existing ST analysis methods often fail to explicitly quantify the belief and uncertainty in decisions caused by noisy ST data, maki
The pretrain-finetuning paradigm has achieved notable success in graph learning. Moreover, merging models fine-tuned on different tasks to enable a parameter-efficient model with multi-task capabilities is gaining increasing attention for its practicality. However, existing model merging methods, su…
Effectively modeling multimodal spatial omics data is critical for understanding tissue complexity and underlying biological mechanisms. While spatial transcriptomics, proteomics, and epigenomics capture molecular features, they lack pathological morphological context. Integrating these omics with h
Graph Neural Networks (GNNs) have shown remarkable capabilities in learning from graph-structured data with various applications such as social analysis and bioinformatics. However, the presence of label noise in real scenarios poses a significant challenge in learning robust GNNs, and their effecti…
Model merging in the pretrain-finetune paradigm has proven effective by combining multiple finetuned models into one with multi-task capabilities. However, existing methods rely on fix or manually tuned merging coefficients, making the unified model sensitive to the initial merging strategy and subo…
This paper studies a novel problem of out-of-distribution graph models merging, which aims to construct a generalized model from multiple graph models pre-trained on different domains with distribution discrepancy. This problem is challenging because of the difficulty in learning domain-invariant kn…
In many real-world scenarios, precisely labeling graph data is costly or impractical, especially in domains like molecular biology or social networks, where annotation requires expert effort. This challenge motivates partial-label graph learning, where each graph is weakly annotated with a candidate…
Continual Learning (CL) requires a model to learn multiple tasks in sequence while maintaining both stability—preserving knowledge from previously learned tasks, and plasticity—effectively learning new tasks. Orthogonal projection has emerged as an effective and popular paradigm in CL, where it part…
Many methods aim to enhance the performance of vision-language models (VLMs) at test time. Among them, transduction has emerged as a promising paradigm due to its strong compatibility and efficiency. However, realistic evaluations often involve highly imbalanced class distributions, which cause perf…
Single-cell RNA sequencing (scRNA-seq) serves a pivotal role in characterizing gene expression at the cellular level, enabling the identification of cell types and advancing the understanding of cellular heterogeneity. Despite the significant progress in scRNA-seq data clustering, we argue that curr
Clustering is fundamental to scRNA-seq analysis, serving as a cornerstone for identifying cell populations and resolving tissue heterogeneity. However, existing methods focus on mining numerical statistical patterns, suffering from semantic agnosticism by neglecting the intrinsic biological function
The recent advancements in language models have significantly catalyzed progress in computational biology. A growing body of research strives to construct unified foundation models for single-cell biology, with language models serving as the cornerstone. In this paper, we systematically review the d…
This paper studies the problem of class-imbalanced graph classification, which aims at effectively classifying the graph categories in scenarios with imbalanced class distributions. While graph neural networks (GNNs) have achieved remarkable success, their modeling ability on imbalanced graph-struct…
Temporal Knowledge Graphs (TKGs) incorporate the temporal feature to express the transience of knowledge by describing when facts occur. TKG extrapolation aims to infer possible future facts based on known history, which has garnered significant attention in recent years. Some existing methods treat…
Pseudo-label-based Semi-Supervised Learning (SSL) often suffers from classifier bias, particularly under class imbalance, as inaccurate pseudo-labels tend to exacerbate existing biases towards majority classes. Existing methods, such as \textit{CDMAD}\cite{cdmad}, utilize simplistic reference inputs…
This paper addresses the challenge of graph domain adaptation on evolving, multiple out-of-distribution (OOD) graphs. Conventional graph domain adaptation methods are confined to single-step adaptation, making them ineffective in handling continuous domain shifts and prone to catastrophic forgetting…
Out-of-Distribution (OOD) detection is critical for safely deploying deep models in open-world environments, where inputs may lie outside the training distribution. During inference on a model trained exclusively with In-Distribution (ID) data, we observe a salient gradient phenomenon: around an ID…
Graph Neural Networks (GNNs) have shown remarkable performance across various domains, yet they often struggle with model bias, particularly in the presence of class imbalance. This bias can lead to suboptimal performance and unfair predictions, especially for underrepresented classes. We introduce
Graph domain adaptation is a key subfield of graph transfer learning that aims to bridge domain gaps by transferring knowledge from a label-rich source graph to an unlabeled target graph. However, most existing methods assume balanced labels in the source graph, which often fails in practice and lea
Spatial multi-modal omics technology, highlighted by Nature Methods as an advanced biological technique in 2023, plays a critical role in resolving biological regulatory processes with spatial context. Recently, graph neural networks based on K-nearest neighbor (KNN) graphs have gained prominence in…
Graph Neural Networks (GNNs) are increasingly deployed in mission-critical tasks, yet they often encounter inputs that lie outside their training distribution, leading to unreliable or overconfident predictions. To address this limitation, we present RAGNOR (Robust Aggregation Graph Norm for Outlier…
Graph contrastive learning (GCL) has achieved remarkable success by following the computer vision paradigm of preserving absolute similarity between augmented views. However, this approach faces fundamental challenges in graphs due to their discrete, non-Euclidean nature -- view generation often bre
Gesture recognition based on surface electromyography (sEMG) has been gaining importance in many 3D Interactive Scenes. However, sEMG is easily influenced by various forms of noise in real-world environments, leading to challenges in providing long-term stable interactions through sEMG. Existing met…
Global Covariance Pooling (GCP) has garnered increasing attention in visual recognition tasks, where second-order statistics frequently yield stronger representations than first-order approaches. However, two main streams of GCP---Newton--Schulz-based iSQRT-COV and exact or near-exact SVD methods---…
Most graph contrastive learning (GCL) methods heavily rely on cross-view contrast, thus facing several concomitant challenges, such as the complexity of designing effective augmentations, the potential for information loss between views, and increased computational costs. To mitigate reliance on cro…
The task of graph-level out-of-distribution (OOD) detection is crucial for deploying graph neural networks in real-world settings. In this paper, we observe a significant difference in the relationship between the largest and second-largest eigenvalues of the Laplacian matrix for in-distribution (ID
This paper addresses the challenge of incremental learning in growing graphs with increasingly complex tasks. The goal is to continuously train a graph model to handle new tasks while retaining proficiency in previous tasks via memory replay. Existing methods usually overlook the importance of memor…
Continual Learning (CL) aims to enable models to continuously acquire new knowledge from a sequence of tasks with avoiding the forgetting of learned information. However, existing CL methods only rely on the parameters of the most recent task for inference, which makes them susceptible to catastroph…
Surface electromyography (sEMG) based gesture recognition offers a natural and intuitive interaction modality for wearable devices. Despite significant advancements in sEMG-based gesture recognition models, existing methods often suffer from high computational latency and increased energy consumptio…
Temporal knowledge graph (TKG) reasoning aims to predict the future missing facts based on historical information and has gained increasing research interest recently. Lots of works have been made to model the historical structural and temporal characteristics for the reasoning task. Most existing w…
As a specific case of graph transfer learning, unsupervised domain adaptation on graphs aims for knowledge transfer from label-rich source graphs to unlabeled target graphs. However, graphs with topology and attributes usually have considerable cross-domain disparity and there are numerous real-worl…