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Adibvafa Fallahpour

4 accepted papers

2026

dnaHNet: A Scalable and Hierarchical Foundation Model for Genomic Sequence Learning

ICML 2026oral

Genomic foundation models have the potential to decode DNA syntax, yet face a fundamental tradeoff. Standard subword tokenizers fragment biologically meaningful motifs such as codons and regulatory elements, while nucleotide-level models preserve biological coherence but incur prohibitive computatio…

Cited by 0SourceScholar
2025

An Investigation of Memorization Risk in Healthcare Foundation Models

NeurIPS 2025poster

Foundation models trained on large-scale de-identified electronic health records (EHRs) hold promise for clinical applications. However, their capacity to memorize patient information raises important privacy concerns. In this work, we introduce a suite of black-box evaluation tests to assess privac…

Cited by 0SourceScholar
2025

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model

NeurIPS 2025poster

Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel at representing sequences, they struggle with multi-step reasoning and lack transparent, biologically meaningful explan…

Cited by 0SourcecodeScholar
2025

MedRAX: Medical Reasoning Agent for Chest X-ray

ICML 2025poster

Chest X-rays (CXRs) play an integral role in driving critical decisions in disease management and patient care. While recent innovations have led to specialized models for various CXR interpretation tasks, these solutions often operate in isolation, limiting their practical utility in clinical pract…