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Ge Yu

22 accepted papers

2026

A Regime-Aware Trajectory Prediction Framework for 1000+ Systems Biology Models

ICML 2026poster

Predicting long-horizon trajectories of biological dynamical systems remains challenging due to substantial system heterogeneity. Most existing machine learning approaches are system-specific, requiring retraining for each new system and exhibiting limited generalization across distinct biological r…

Cited by 0SourceScholar
2026

Automated Formalization via Conceptual Retrieval-Augmented LLMs

ICLR 2026poster

Interactive theorem provers (ITPs) require manual formalization, which is labor-intensive and demands expert knowledge. While automated formalization offers a potential solution, it faces two major challenges: model hallucination (e.g., undefined predicates, symbol misuse, and version incompatibilit…

Cited by 0SourcecodeScholar
2026

LEGAL∆: ENHANCING LEGAL REASONING IN LLMS VIA REINFORCEMENT LEARNING WITH CHAIN-OF-THOUGHT GUIDED INFORMATION GAIN

ICASSP 2026poster

Legal Artificial Intelligence (LegalAI) has achieved notable advances in automating judicial decision-making with the support of Large Language Models (LLMs). However, existing legal LLMs still struggle to generate reliable and interpretable reasoning processes. They often default to fast-thinking b…

Cited by 0SourcePDFScholar
2025

COAST: Enhancing the Code Debugging Ability of LLMs through Communicative Agent Based Data Synthesis

NAACL 2025findings

Code debugging is a vital stage of software development, essential for ensuring the reliability and performance of Large Language Models (LLMs) in the code generation task. Human debugging typically follows a multi-stage process, which includes Bug Localization, Bug Identification, Code Repair, and…

2025

ExpandR: Teaching Dense Retrievers Beyond Queries with LLM Guidance

EMNLP 2025

Large language models (LLMs) have demonstrated significant potential in enhancing dense retrieval through query augmentation. However, most existing methods treat the LLM and the retriever as separate modules, overlooking the alignment between generation and ranking objectives. In this work, we prop

2025

Hierarchical Gradient-Based Genetic Sampling for Accurate Prediction of Biological Oscillations

AAAI 2025technical

Biological oscillations are periodic changes in various signaling processes crucial for the proper functioning of living organisms. These oscillations are modeled by ordinary differential equations, with coefficient variations leading to diverse periodic behaviors, typically measured by oscillatory…

Cited by 0SourcePDFScholar
2025

Judge as A Judge: Improving the Evaluation of Retrieval-Augmented Generation through the Judge-Consistency of Large Language Models

ACL 2025finding

Retrieval-Augmented Generation (RAG) has proven its effectiveness in alleviating hallucinations for Large Language Models (LLMs). However, existing automated evaluation metrics cannot fairly evaluate the outputs generated by RAG models during training and evaluation. LLM-based judgment models provid…

2025

LBMKGC: Large Model-Driven Balanced Multimodal Knowledge Graph Completion

NeurIPS 2025poster

Multi-modal Knowledge Graph Completion (MMKGC) aims to predict missing entities, relations, or attributes in knowledge graphs by collaboratively modeling the triple structure and multimodal information (e.g., text, images, videos) associated with entities. This approach facilitates the automatic dis…

Cited by 0SourcecodeScholar
2025

MeMoTune: A Measure and Moment-Driven Fine-Tuning Framework for Quantized Large Language Models

ACL 2025finding

Quantizing large language models (LLMs) is essential for reducing memory and computational costs in natural language processing. Existing methods combine quantization with parameter-efficient fine-tuning but often fail to meet practical performance requirements. This paper introduces MeMoTune, a nov…

2025

ParamMute: Suppressing Knowledge-Critical FFNs for Faithful Retrieval-Augmented Generation

NeurIPS 2025poster

Large language models (LLMs) integrated with retrieval-augmented generation (RAG) have improved factuality by grounding outputs in external evidence. However, they remain susceptible to unfaithful generation, where outputs contradict retrieved context despite its relevance and accuracy. Existing app…

Cited by 0SourcecodeScholar
2025

Priority Guided Explanation for Knowledge Tracing with Dual Ranking and Similarity Consistency

IJCAI 2025

Knowledge tracing plays a pivotal role in enabling personalized learning on online platforms. While deep learning-based approaches have achieved impressive predictive performance, their limited interpretability poses a significant barrier to practical adoption. Existing explanation methods primarily

Cited by 0SourcePDFScholar
2025

RAG-DDR: Optimizing Retrieval-Augmented Generation Using Differentiable Data Rewards

ICLR 2025poster

Retrieval-Augmented Generation (RAG) has proven its effectiveness in mitigating hallucinations in Large Language Models (LLMs) by retrieving knowledge from external resources. To adapt LLMs for the RAG systems, current approaches use instruction tuning to optimize LLMs, improving their ability to ut…

2025

RankCoT: Refining Knowledge for Retrieval-Augmented Generation through Ranking Chain-of-Thoughts

ACL 2025long

Retrieval-Augmented Generation (RAG) enhances the performance of Large Language Models (LLMs) by incorporating external knowledge. However, LLMs still encounter challenges in effectively utilizing the knowledge from retrieved documents, often being misled by irrelevant or noisy information. To addre…

2025

ReCUT: Balancing Reasoning Length and Accuracy in LLMs via Stepwise Trails and Preference Optimization

EMNLP 2025

Recent advances in Chain-of-Thought (CoT) prompting have substantially improved the reasoning capabilities of Large Language Models (LLMs). However, these methods often suffer from overthinking, leading to unnecessarily lengthy or redundant reasoning traces. Existing approaches attempt to mitigate t

2024

Cleaner Pretraining Corpus Curation with Neural Web Scraping

ACL 2024short

The web contains large-scale, diverse, and abundant information to satisfy the information-seeking needs of humans. Through meticulous data collection, preprocessing, and curation, webpages can be used as a fundamental data resource for language model pretraining. However, when confronted with the p…

2024

INTERVENOR: Prompting the Coding Ability of Large Language Models with the Interactive Chain of Repair

ACL 2024findings

This paper introduces INTERVENOR (INTERactiVE chaiN Of Repair), a system designed to emulate the interactive code repair processes observed in humans, encompassing both code diagnosis and code repair. INTERVENOR prompts Large Language Models (LLMs) to play distinct roles during the code repair proce…

2024

MARVEL: Unlocking the Multi-Modal Capability of Dense Retrieval via Visual Module Plugin

ACL 2024long

This paper proposes Multi-modAl Retrieval model via Visual modulE pLugin (MARVEL), which learns an embedding space for queries and multi-modal documents to conduct retrieval. MARVEL encodes queries and multi-modal documents with a unified encoder model, which helps to alleviate the modality gap betw…

2023

Soft Target-Enhanced Matching Framework for Deep Entity Matching

AAAI 2023technical

Deep Entity Matching (EM) is one of the core research topics in data integration. Typical existing works construct EM models by training deep neural networks (DNNs) based on the training samples with onehot labels. However, these sharp supervision signals of onehot labels harm the generalization of…

Cited by 7SourcePDFScholar
2023

Structure-Aware Language Model Pretraining Improves Dense Retrieval on Structured Data

ACL 2023findings

This paper presents Structure Aware Dense Retrieval (SANTA) model, which encodes user queries and structured data in one universal embedding space for retrieving structured data. SANTA proposes two pretraining methods to make language models structure-aware and learn effective representations for st…

2023

Universal Vision-Language Dense Retrieval: Learning A Unified Representation Space for Multi-Modal Retrieval

ICLR 2023poster

This paper presents Universal Vision-Language Dense Retrieval (UniVL-DR), which builds a unified model for multi-modal retrieval. UniVL-DR encodes queries and multi-modality resources in an embedding space for searching candidates from different modalities. To learn a unified embedding space for mul…