3 accepted papers
Protein foundation models have advanced rapidly, with most approaches falling into two dominant paradigms. Sequence-only language models (e.g., ESM-2) capture sequence semantics at scale but lack structural grounding. MSA-based predictors (e.g., AlphaFold 2/3) achieve accurate folding by exploiting…
Predicting the types and affinities of protein-protein interactions (PPIs) is crucial for understanding biological processes and developing novel therapeutic approaches. While encoding proteins themselves is essential, PPI networks can also provide rich prior knowledge for these predictive tasks. Ho…
Predicting human motion requires addressing dependencies and errors for pose forecasting from sequences. The transformer’s self-attention aids this, but its complexity poses computational challenges. We present an efficient DeformMLP network without self-attention, using fully connected layers. Defo…