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Jie Zheng

6 accepted papers

2026

Towards Sub-second Biological Foundation Model Infrastructure: A Quantized Consistency Diffusion Framework for Molecular Docking

ICML 2026oral

The emergence of Vibe Researching is transforming scientific research into an interactive workflow, where agents orchestrate complex tasks via the Model Context Protocol (MCP). In this ecosystem, scientific tools must evolve from offline simulators into responsive Agent Skills. However, diffusion-ba…

Cited by 0SourceScholar
2025

Multi-Scale Conditional Generative Adversarial Networks for Wind Speed Data Imputation in Earthen Ruins Protection

ICASSP 2025accepted

Time-series data are vital for preserving earthen ruins and evaluating wind erosion effects. Harsh conditions at these sites often lead to sensor degradation and significant data gaps. To tackle wind speed data imputation for such environments, we introduce a Multi-Scale Conditional Generative Adver…

Cited by 0SourceScholar
2024

A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification

AAAI 2024technical

One individual human’s immune repertoire consists of a huge set of adaptive immune receptors at a certain time point, representing the individual's adaptive immune state. Immune repertoire classification and associated receptor identification have the potential to make a transformative contribution…

2024

Large Language Models for Automated Open-domain Scientific Hypotheses Discovery

ACL 2024findings

Hypothetical induction is recognized as the main reasoning type when scientists make observations about the world and try to propose hypotheses to explain those observations. Past research on hypothetical induction is under a constrained setting: (1) the observation annotations in the dataset are ca…

2024

Prompt-based Generation of Natural Language Explanations of Synthetic Lethality for Cancer Drug Discovery

COLING 2024main

Synthetic lethality (SL) offers a promising approach for targeted anti-cancer therapy. Deeply understanding SL gene pair mechanisms is vital for anti-cancer drug discovery. However, current wet-lab and machine learning-based SL prediction methods lack user-friendly and quantitatively evaluable expla…

2022

Exploring the Impact of Negative Samples of Contrastive Learning: A Case Study of Sentence Embedding

ACL 2022findings

Contrastive learning is emerging as a powerful technique for extracting knowledge from unlabeled data. This technique requires a balanced mixture of two ingredients: positive (similar) and negative (dissimilar) samples. This is typically achieved by maintaining a queue of negative samples during tra…