51 accepted papers
Standard reward models typically predict scalar scores that fail to capture the multifaceted nature of response quality in non-verifiable domains, such as creative writing or open-ended instruction following. To address this limitation, we propose Rubric-ARM, a framework that jointly optimizes a rub…
Time series forecasting is critical in domains such as finance, energy, and healthcare, yet real-world datasets often exhibit non-stationarity, noise, missing values, and distribution shifts, posing severe challenges for generalization. In practice, industry solutions typically rely on customized fo…
Large Language Models (LLMs) are widely used as judges to evaluate response quality, providing a scalable alternative to human evaluation. However, most LLM judges operate solely on intrinsic text-based reasoning, limiting their ability to verify complex constraints or perform accurate computation.…
We introduce MedAgentGym, a scalable and interactive training environment designed to enhance coding-based biomedical reasoning capabilities in large language model (LLM) agents. MedAgentGym comprises 72,413 task instances across 129 categories derived from 12 authentic real-world biomedical scenari…
Physiological waveforms (e.g., ECG, PPG, EEG) encode clinically meaningful information in fine-grained morphology, precise timing, and cross-channel dynamics, yet most machine learning systems still treat them as generic time series and optimize end-to-end prediction. In this position paper, **we ar…
Cardiovascular disease (CVD) is a leading cause of mortality worldwide. Electrocardiograms (ECGs) are the most widely used non-invasive tool for cardiac assessment, yet large, well-annotated ECG corpora are scarce due to cost, privacy, and workflow constraints. Generating ECGs can aid mechanistic un…
While recent vision-language models (VLMs) demonstrate strong image understanding, their ability to "think with images," i.e., to reason through multi-step visual interactions, remains limited. We introduce VISTA-Gym, a scalable training environment for incentivizing tool-integrated visual reasoning
Understanding how the brain encodes visual information is a central challenge in neuroscience and machine learning. A promising approach is to reconstruct visual stimuli—essentially images—from functional Magnetic Resonance Imaging (fMRI) signals. This involves two stages: transforming fMRI signals…
The increasing scale of graph datasets has significantly improved the performance of graph representation learning methods, but it has also introduced substantial training challenges. Graph dataset condensation techniques have emerged to compress large datasets into smaller yet information-rich data
Search-augmented LLMs often struggle with complex reasoning tasks due to ineffective multi-hop retrieval and limited reasoning ability. We propose AceSearcher, a cooperative self-play framework that trains a single large language model (LLM) to alternate between two roles: a decomposer that breaks d…
Language Models (LMs) have advanced diagnosis prediction by leveraging the semantic understanding of medical concepts in Electronic Health Records (EHRs). Despite these advancements, existing LM-based methods often fail to capture the structures of medical concepts (e.g., hierarchy structure from do…
Machine unlearning aims to eliminate the influence of a subset of training samples (i.e., unlearning samples) from a trained model. Effectively and efficiently removing the unlearning samples without negatively impacting the overall model performance is challenging. Existing works mainly exploit inp
Recent studies reveal that large language models (LLMs) often struggle to resolve conflicting instructions embedded within hierarchical prompts, resulting in decreased compliance with system-level directives and compromising the reliability of safety-critical applications. While earlier approaches a…
Federated Graph Learning (FGL) has gained significant attention as a privacy-preserving approach to collaborative learning, but the computational demands increase substantially as datasets grow and Graph Neural Network (GNN) layers deepen. To address these challenges, we propose $\textbf{EAGLES}$, a…
Large Language Models (LLMs) have achieved impressive success across a range of natural language processing tasks. However, they still underperform in text classification tasks compared to fine-tuned small models. This can be linked to complexities in addressing context-dependent expressions and com
Federated Graph Learning (FGL) has emerged as a solution to address real-world privacy concerns and data silos in graph learning, which relies on Graph Neural Networks (GNNs). Nevertheless, the homophily level discrepancies within the local graph data of clients, termed homophily heterogeneity, sign…
Graph condensation (GC) is an emerging technique designed to learn a significantly smaller graph that retains the essential information of the original graph. This condensed graph has shown promise in accelerating graph neural networks while preserving performance comparable to those achieved with t…
The rapid advancement of large language model (LLM) agents has raised new concerns regarding their safety and security. In this paper, we propose GuardAgent, the first guardrail agent to protect target agents by dynamically checking whether their actions satisfy given safety guard requests. Specific…
Existing claim verification datasets often do not require systems to perform complex reasoning or effectively interpret multimodal evidence. To address this, we introduce a new task: multi-hop multimodal claim verification. This task challenges models to reason over multiple pieces of evidence from…
GUI agents powered by vision-language models (VLMs) show promise in automating complex digital tasks. However, their effectiveness in real-world applications is often limited by scarce training data and the inherent complexity of these tasks, which frequently require long-tailed knowledge covering r
Retrieval-augmented generation (RAG) enhances the question answering (QA) abilities of large language models (LLMs) by integrating external knowledge. However, adapting general-purpose RAG systems to specialized fields such as science and medicine poses unique challenges due to distribution shifts a…
Federated Learning (FL) on graphs enables collaborative model training to enhance performance without compromising the privacy of each client. However, existing methods often overlook the mutable nature of graph data, which frequently introduces new nodes and leads to shifts in label distribution. S…
Developing effective biomedical retrieval models is important for excelling at knowledge-intensive biomedical tasks but still challenging due to the lack of sufficient publicly annotated biomedical data and computational resources. We present BMRetriever, a series of dense retrievers for enhancing b…
Recent advancements in multimodal foundation models have showcased impressive capabilities in understanding and reasoning with visual and textual information. Adapting these foundation models trained for general usage to specialized domains like biomedicine requires large-scale domain-specific instr…
Graph Neural Networks (GNNs), a type of neural network that can learn from graph-structured data through neighborhood information aggregation, have shown superior performance in various downstream tasks. However, as the number of layers increases, node representations becomes indistinguishable, whic…
Clinicians often rely on data engineers to retrieve complex patient information from electronic health record (EHR) systems, a process that is both inefficient and time-consuming. We propose EHRAgent, a large language model (LLM) agent empowered with accumulative domain knowledge and robust coding c…
Clinical natural language processing faces challenges like complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet, their direct deployment can lead to privacy issues and are constrained by resources. To address this challenge,…
Despite their improved capabilities in generation and reasoning, adapting large language models (LLMs) to the biomedical domain remains challenging due to their immense size and privacy concerns. In this study, we propose MedAdapter, a unified post-hoc adapter for test-time adaptation of LLMs toward…
We present RAM-EHR, a Retrieval AugMentation pipeline to improve clinical predictions on Electronic Health Records (EHRs). RAM-EHR first collects multiple knowledge sources, converts them into text format, and uses dense retrieval to obtain information related to medical concepts. This strategy addr…
In the current Internet landscape, the rampant spread of fake news, particularly in the form of multi-modal content, poses a great social threat. While automatic multi-modal fake news detection methods have shown promising results, the lack of explainability remains a significant challenge. Existing…
Pre-training on graph neural networks (GNNs) aims to learn transferable knowledge for downstream tasks with unlabeled data, and it has recently become an active research area. The success of graph pre-training models is often attributed to the massive amount of input data. In this paper, however, we…
Previous research has demonstrated the advantages of integrating data from multiple sources over traditional unimodal data, leading to the emergence of numerous novel multimodal applications. We propose a multimodal classification benchmark MuG with eight datasets that allows researchers to evaluate…
Training deep neural networks (DNNs) with limited supervision has been a popular research topic as it can significantly alleviate the annotation burden. Self-training has been successfully applied in semi-supervised learning tasks, but one drawback of self-training is that it is vulnerable to the la…
Images contain rich relational knowledge that can help machines understand the world. Existing methods on visual knowledge extraction often rely on the pre-defined format (e.g., sub-verb-obj tuples) or vocabulary (e.g., relation types), restricting the expressiveness of the extracted knowledge. In t…
Information extraction, e.g., attribute value extraction, has been extensively studied and formulated based only on text. However, many attributes can benefit from image-based extraction, like color, shape, pattern, among others. The visual modality has long been underutilized, mainly due to multimo…
Graphs are widely used to model interconnected entities and improve downstream predictions in various real-world applications. However, real-world graphs nowadays are often associated with complex attributes on multiple types of nodes and even links that are hard to model uniformly, while the widely…
Human brains are commonly modeled as networks of Regions of Interest (ROIs) and their connections for the understanding of brain functions and mental disorders. Recently, Transformer-based models have been studied over different types of data, including graphs, shown to bring performance gains widel…
Graph neural networks (GNNs) have been widely used in modeling graph structured data, owing to its impressive performance in a wide range of practical applications. Recently, knowledge distillation (KD) for GNNs has enabled remarkable progress in graph model compression and knowledge transfer. Howev…
Federated learning (FL) can be essential in knowledge representation, reasoning, and data mining applications over multi-source knowledge graphs (KGs). A recent study FedE first proposes an FL framework that shares entity embeddings of KGs across all clients. However, entity embedding sharing from F…
Graph neural networks (GNNs) have drawn significant research attention recently, mostly under the setting of semi-supervised learning. When task-agnostic representations are preferred or supervision is simply unavailable, the auto-encoder framework comes in handy with a natural graph reconstruction…
Stepping from sentence-level to document-level, the research on relation extraction (RE) confronts increasing text length and more complicated entity interactions. Consequently, it is more challenging to encode the key information sources—relevant contexts and entity types. However, existing methods…
Social recommendation has shown promising improvements over traditional systems since it leverages social correlation data as an additional input. Most existing work assumes that all data are available to the recommendation platform. However, in practice, user-item interaction data (e.g.,rating) and…
Federated learning has emerged as an important paradigm for training machine learning models in different domains. For graph-level tasks such as graph classification, graphs can also be regarded as a special type of data samples, which can be collected and stored in separate local systems. Similar t…
Graph representation learning has achieved great success in many areas, including e-commerce, chemistry, biology, etc. However, the fundamental problem of choosing the appropriate dimension of node embedding for a given graph still remains unsolved. The commonly used strategies for Node Embedding Di…
Many data mining and analytical tasks rely on the abstraction of networks (graphs) to summarize relational structures among individuals (nodes). Since relational data are often sensitive, we aim to seek effective approaches to generate utility-preserved yet privacy-protected structured data. In thi…
Graphs have been widely used in data mining and machine learning due to their unique representation of real-world objects and their interactions. As graphs are getting bigger and bigger nowadays, it is common to see their subgraphs separately collected and stored in multiple local systems. Therefore…
Network representation learning aims at transferring node proximity in networks into distributed vectors, which can be leveraged in various downstream applications. Recent research has shown that nodes in a network can often be organized in latent hierarchical structures, but without a particular un…
Graph neural networks (GNNs) have achieved superior performance in various applications, but training dedicated GNNs can be costly for large-scale graphs. Some recent work started to study the pre-training of GNNs. However, none of them provide theoretical insights into the design of their framework…
Recent studies have shown that Graph Convolutional Networks (GCNs) are vulnerable to adversarial attacks on the graph structure. Although multiple works have been proposed to improve their robustness against such structural adversarial attacks, the reasons for the success of the attacks remain uncle…
Graph Neural Networks (GNNs) have been shown to be powerful in a wide range of graph-related tasks. While there exists various GNN models, a critical common ingredient is neighborhood aggregation, where the embedding of each node is updated by referring to the embedding of its neighbors. This paper…
Graph embedding has been intensively studied recently, due to the advance of various neural network models. Theoretical analyses and empirical studies have pushed forward the translation of discrete graph structures into distributed representation vectors, but seldom considered the reverse direction…